PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014607-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 178aa    MW: 19467.8 Da    PI: 8.2001
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014607-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.54.1e-5827124198
                  NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                            vreqdrflPian+srimkk lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl+
  SMil_00014607-RA_Salv  27 VREQDRFLPIANISRIMKKGLPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLN 114
                            69************************************************************************************** PP

                  NF-YB  89 kyrelegekk 98 
                            +yre+eg++k
  SMil_00014607-RA_Salv 115 RYREMEGDTK 124
                            *******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5422137IPR009072Histone-fold
SuperFamilySSF471132.95E-4130135IPR009072Histone-fold
PfamPF008085.4E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-206179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-208098No hitNo description
PRINTSPR006151.1E-2099117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAEQGAPGSP VGGSHDSGGD QSPRSGVREQ DRFLPIANIS RIMKKGLPPN GKIAKDAKET  60
VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIDPLK VYLNRYREME  120
GDTKGSAKGT DGSTKKDGLQ QQIPNSQSTF PATSKASSPG FFFTRHELWK YSVSTLPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4727118192Transcription factor HapC (Eurofung)
4g92_B3e-4727118192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094722.15e-96PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_011094723.15e-96PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ8VYK45e-80NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HS791e-85A0A0V0HS79_SOLCH; Putative nuclear transcription factor Y subunit B-10-like
STRINGPOPTR_0008s04440.19e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-81nuclear factor Y, subunit B8